PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn248321
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YB
Protein Properties Length: 143aa    MW: 16115.9 Da    PI: 4.6099
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn248321genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB123.49.1e-397802397
       NF-YB 23 anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                +++k s+d+ket+qecvsefisf+t+ea+d+cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yre+eg++
  Achn248321  7 KQSK-SDDSKETIQECVSEFISFITGEANDRCQREQRKTITAEDVLWAMSKLGFDDYIEPLNLYLSRYREFEGDR 80
                4444.89******************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.6E-35885IPR009072Histone-fold
SuperFamilySSF471132.85E-27983IPR009072Histone-fold
PfamPF008083.8E-161154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-171836No hitNo description
PROSITE patternPS0068502137IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.7E-173755No hitNo description
PRINTSPR006151.7E-175674No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDKNVRKQSK SDDSKETIQE CVSEFISFIT GEANDRCQRE QRKTITAEDV LWAMSKLGFD  60
DYIEPLNLYL SRYREFEGDR GSIRSEPFVK RAVEFAPVFQ LGGHHNGFFG SAMGGFFLKD  120
MSNEGSSQAA VAGIEPYFQC DE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B1e-2711753094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-2711753094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635503.15e-67PREDICTED: nuclear transcription factor Y subunit B-6
SwissprotQ84W663e-43NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBLD7SZ495e-67D7SZ49_VITVI; Putative uncharacterized protein
STRINGVIT_00s0956g00020.t011e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.29e-45nuclear factor Y, subunit B6